Index

A

activate_params() (caltrig.start_gui.MainWindow method)

add_cell_id_group() (caltrig.core.backend.DataInstance method) add_missed() (caltrig.core.backend.DataInstance method)

B

backup_data() (caltrig.core.backend.DataInstance method)

C

caltrig.core.backend module caltrig.start_gui module CellClustering (class in caltrig.core.backend) centroid() (caltrig.core.backend.DataInstance method)

centroid_max() (caltrig.core.backend.DataInstance method) check_DFF() (caltrig.core.backend.DataInstance method) check_E() (caltrig.core.backend.DataInstance method) check_essential_data() (caltrig.core.backend.DataInstance method) closeEvent() (caltrig.start_gui.MainWindow method) compute_psd() (caltrig.core.backend.CellClustering method)

D

DataInstance (class in caltrig.core.backend)

delete_selection() (caltrig.start_gui.MainWindow method) delete_xarray() (in module caltrig.core.backend)

E

Event (class in caltrig.core.backend)

G

generate_ini_file() (caltrig.start_gui.MainWindow method) get_average_peak_dff() (caltrig.core.backend.DataInstance method) get_cell_ids() (caltrig.core.backend.DataInstance method) get_filtered_C() (caltrig.core.backend.DataInstance method) get_interval_section() (caltrig.core.backend.Event method) get_mad() (caltrig.core.backend.DataInstance method) get_mean_iei_per_cell() (caltrig.core.backend.DataInstance method)

get_noise() (caltrig.core.backend.DataInstance method) get_savgol() (caltrig.core.backend.DataInstance method) get_section() (caltrig.core.backend.Event method) get_SNR() (caltrig.core.backend.DataInstance method) get_timestep() (caltrig.core.backend.DataInstance method) get_transient_frames() (caltrig.core.backend.DataInstance method) get_transient_frames_iti_dict() (caltrig.core.backend.DataInstance method)

L

load_cell_groups() (caltrig.core.backend.DataInstance method) load_clustering() (caltrig.start_gui.MainWindow method) load_clustering_params() (caltrig.start_gui.MainWindow method)

load_data() (caltrig.core.backend.DataInstance method) (caltrig.start_gui.MainWindow method) load_instance() (caltrig.start_gui.MainWindow method) load_saved_state() (caltrig.start_gui.MainWindow method)

M

MainWindow (class in caltrig.start_gui) merge_cells() (caltrig.core.backend.DataInstance method)

module caltrig.core.backend caltrig.start_gui

O

open_minian() (in module caltrig.core.backend)

overwrite_xarray() (in module caltrig.core.backend)

P

prune_rejected_cells() (caltrig.core.backend.DataInstance method)

R

reject_cells() (caltrig.core.backend.DataInstance method)

remove_cell_id_group() (caltrig.core.backend.DataInstance method) remove_missed() (caltrig.core.backend.DataInstance method)

S

save() (caltrig.start_gui.MainWindow method) save_cell_groups() (caltrig.core.backend.DataInstance method) save_minian() (in module caltrig.core.backend) set_values() (caltrig.core.backend.Event method)

start_caltrig() (caltrig.start_gui.MainWindow method) start_ga() (caltrig.start_gui.MainWindow method) start_gui() (in module caltrig.start_gui) start_inspection() (caltrig.start_gui.MainWindow method)

U

unit_id_consistency() (caltrig.core.backend.DataInstance method) update_and_save_E() (caltrig.core.backend.DataInstance method)

update_cluster() (caltrig.start_gui.MainWindow method) update_defaults() (caltrig.start_gui.MainWindow method) update_params() (caltrig.start_gui.MainWindow method)

V

visualize_clusters() (caltrig.core.backend.CellClustering method)

visualize_clusters_color() (caltrig.core.backend.CellClustering method) visualize_dendrogram() (caltrig.core.backend.CellClustering method)